Growth, Viability, and Death of Planktonic and Biofilm Sphingomonas desiccabilis in Simulated Martian Brines

This research was supported by the UK Science Technology and Facilities Council under Grant ST/M001261/1.Aqueous solutions on Mars are theorized to contain very different ion compositions than those on Earth. To determine the effect of such solutions on typical environmental micro-organisms, which could be released from robotic spacecraft or human exploration activity, we investigated the resistance of Sphingomonas desiccabilis to brines that simulate the composition of martian aqueous environments. S. desiccabilis is a desiccation-resistant, biofilm-forming microbe found in desert crusts. The viability of cells in both planktonic and biofilm forms was measured after exposure to simulated martian brines. Planktonic cells showed a loss of viability over the course of several hours in almost all of the seven brines tested. Biofilms conferred greater resistance to all the brines, including those with low water activity and pH, but even cells in biofilms showed a complete loss of viability in <6 h in the harsher brines and in <2 days in the less harsh brines. One brine, however, allowed the microbes to maintain viability over several days, despite having a water activity and pH lower and ionic strength higher than brines that reduced viability over the same timescales, suggesting important ion-specific effects. These data show that biofilm-forming cells have a greater capacity to resist martian aqueous extremes, but that evaporative or deliquescent brines are likely to be destructive to many organisms over relatively short timescales, with implications for the habitability of Mars and for micro-organisms dispersed by robotic or human explorers.Publisher PDFPeer reviewe

An optical fiber double scrambler and mechanical agitator system for the Keck planet finder spectrograph

We present the design and test results of a double-scrambler and fiber agitator system for the Keck Planet Finder (KPF) spectrograph. The mechanical agitator for modal noise suppression is constructed from two linear stages with the fibers mounted in a “W” curve. When driven back-and-forth at different rates, the stages change the position of the fiber curves, and hence vary the modes propagating through the fiber. Near-field temporal centroid shifts caused by modal-noise are reduced by a factor of 100 by the agitator, while mid-range spatial frequencies have reduced power by a factor of ∼300 in the near-field, and ∼1000 in the far-field. The scrambling system incorporates two octagonal fibers, and a scrambler consisting of two identical cemented lenses ∼20 cm apart, which exchanges the optical near- and far-fields of the fibers. The scrambler shows scrambling gains >16,000 in the near-field, and >40,000 in the far-field. The measured throughput efficiency of 99.3% of the expected maximum demonstrates that scrambler-induced focal ratio degradation (FRD) is minimal. The scrambler also serves as the feed-through into the vacuum chamber where the spectrograph is housed, thereby removing concerns about stressing the fibers, and introducing FRD, at this interface. Our illumination stabilization system, consisting of two octagonal fibers, a two lens scrambler, and a mechanical agitator, produces very homogeneous fiber output in both the near and far-fields. When coupled to the Keck Planet Finder spectrograph, this system provides illumination stability corresponding to a velocity of 0.30 m s^(−1)

An optical fiber double scrambler and mechanical agitator system for the Keck planet finder spectrograph

We present the design and test results of a double-scrambler and fiber agitator system for the Keck Planet Finder (KPF) spectrograph. The mechanical agitator for modal noise suppression is constructed from two linear stages with the fibers mounted in a “W” curve. When driven back-and-forth at different rates, the stages change the position of the fiber curves, and hence vary the modes propagating through the fiber. Near-field temporal centroid shifts caused by modal-noise are reduced by a factor of 100 by the agitator, while mid-range spatial frequencies have reduced power by a factor of ∼300 in the near-field, and ∼1000 in the far-field. The scrambling system incorporates two octagonal fibers, and a scrambler consisting of two identical cemented lenses ∼20 cm apart, which exchanges the optical near- and far-fields of the fibers. The scrambler shows scrambling gains >16,000 in the near-field, and >40,000 in the far-field. The measured throughput efficiency of 99.3% of the expected maximum demonstrates that scrambler-induced focal ratio degradation (FRD) is minimal. The scrambler also serves as the feed-through into the vacuum chamber where the spectrograph is housed, thereby removing concerns about stressing the fibers, and introducing FRD, at this interface. Our illumination stabilization system, consisting of two octagonal fibers, a two lens scrambler, and a mechanical agitator, produces very homogeneous fiber output in both the near and far-fields. When coupled to the Keck Planet Finder spectrograph, this system provides illumination stability corresponding to a velocity of 0.30 m s^(−1)

Crystal cookery – using high-throughput technologies and the grocery store as a teaching tool

Using high-throughput crystallization screening technologies and data analysis, an educational program has been developed to teach the scientific method through crystallization and access to a grocery store, a post office and the internet

The role of ligand efficiency metrics in drug discovery

The judicious application of ligand or binding efficiencies, which quantify the molecular properties required to gain binding affinity for a drug target, is gaining traction in the selection and optimisation of fragments, hits, and leads. Retrospective analysis of recently marketed oral drugs shows that they frequently have highly optimised ligand efficiency values for their target. Optimising ligand efficiencies based on both molecular size and lipophilicity, when set in the context of the specific target, has the potential to ameliorate the molecular inflation that pervades current practice in medicinal chemistry, and to increase the developability of drug candidates

Small molecules, big targets: drug discovery faces the protein-protein interaction challenge.

Protein-protein interactions (PPIs) are of pivotal importance in the regulation of biological systems and are consequently implicated in the development of disease states. Recent work has begun to show that, with the right tools, certain classes of PPI can yield to the efforts of medicinal chemists to develop inhibitors, and the first PPI inhibitors have reached clinical development. In this Review, we describe the research leading to these breakthroughs and highlight the existence of groups of structurally related PPIs within the PPI target class. For each of these groups, we use examples of successful discovery efforts to illustrate the research strategies that have proved most useful.JS, DES and ARB thank the Wellcome Trust for funding.This is the author accepted manuscript. The final version is available from Nature Publishing Group via http://dx.doi.org/10.1038/nrd.2016.2